It sounds like you've switched from boxes running the V6 (TIVO) firmware to running 360 firmware (Horizon).
Unfortunately the way the 360 is configured the preset shows all recorded programs regardless of which box they were made on.
If you go to Saved > Recorded > See all > and click on the Recorded tab you will see a drop down with the following options:-
Recorded, Recorded on this Virgin TV box, Planned, and Planned for this Virgin TV box. - highlighting "Recorded on this Virgin TV box" will just show those programs recorded on that box.
You can make the 360 record programs on predetermined boxes.
When setting up a series link go to Advanced and select which box you want the recording to be made on. It will then be recorded on that box going forward, even if the default recording box is the other one. So all you need to do is reset your series links to record on the box you want them to. Unfortunately to reset the links, you'll need to delete and reset. You can also use the same method to record individual programs rather than series.
When going to Settings > System> Recording Settings you can select each box individually and the interface now lists the percentage used on each box (applies to upgraded V6 boxes as they all have hard drives)
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